DNA

Part:BBa_K2074126

Designed by: Hao Feng   Group: iGEM16_FAFU-CHINA   (2016-10-11)


III-ACE8 satellite RAYSIII by Rumex acetosa

The DNA sequences deposited in the EMBL database under the accession number EU644727.


LOCUS EU644727 1113 bp DNA linear PLN 03-MAR-2009 DEFINITION Rumex acetosa clone III-ACE8 satellite RAYSIII sequence. ACCESSION EU644727 VERSION EU644727.1 GI:194396239 KEYWORDS . SOURCE Rumex acetosa (garden sorrel) 

ORGANISM  Rumex acetosa
          Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
          Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
          Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae;
          Rumiceae; Rumex.

REFERENCE 1 (bases 1 to 1113) 

AUTHORS   Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M.
TITLE     Accumulation of Y-specific satellite DNAs during the evolution of
          Rumex acetosa sex chromosomes
JOURNAL   Mol. Genet. Genomics 281 (3), 249-259 (2009)
 PUBMED   19085011

REFERENCE 2 (bases 1 to 1113) 

AUTHORS   Beatrice,M., Manzano,S. and Jamilena,M.
TITLE     Direct Submission
JOURNAL   Submitted (14-APR-2008) Applied Biology, University of Almeria,
          Carretera de Sacramento S/N, Almeria 04120, Spain

FEATURES Location/Qualifiers 

   source          1..1113
                   /organism="Rumex acetosa"
                   /mol_type="genomic DNA"
                   /db_xref="taxon:41241"
                   /clone="III-ACE8"
   repeat_region   1..1113
                   /rpt_type=tandem
                   /satellite="satellite:RAYSIII"

ORIGIN 

      1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt
     61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta
    121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt
    181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca
    241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt
    301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag
    361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc
    421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc
    481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg
    541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga
    601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat
    661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact
    721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc
    781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta
    841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca
    901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt
    961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca
   1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg
   1081 ttatttcaat agatcaactc cttagtagac taa

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 520
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
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